Basic Information
Locus ID:
Thhalv10005920m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MATH domain and coiled-coil domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 1782783 | 1784844 | + | Thhalv10005920m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 54,007.80 Da | 41.01 | 75.04 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 8 | 134 | 2.46453E-34 | IPR002083 |
| Pfam | PF00917 | MATH domain | 14 | 124 | 6.4E-14 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 138 | 2.45E-32 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 3 | 140 | 2.2E-34 | IPR008974 |
| SMART | SM00061 | math_3 | 8 | 113 | 1.3E-17 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 6 | 132 | 28.701029 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 237 | - | - |
| Coils | Coil | Coil | 444 | 471 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58440.1 | TRAF-like superfamily protein. | 0 |
| RefSeq | XP_006402788.1 | MATH domain and coiled-coil domain-containing protein At3g58440 [Eutrema salsugineum] | 0 |
| Q9M2H2 | MATH domain and coiled-coil domain-containing protein At3g58440 OS=Arabidopsis thaliana OX=3702 GN=At3g58440 PE=4 SV=2 | 0 | |
| TrEMBL | V4NDW2 | MATH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005920mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020776, gene:ENSEOMG00000042009 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053150, pistato.v30053760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... |
| Brassicaceae | Arabidopsis thaliana | 38 | AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... |
| Brassicaceae | Eutrema salsugineum | 38 | Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 18 | Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... |
| Brassicaceae | Brassica nigra | 59 | BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021253 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36802 |
| Salicaceae | Populus euphratica | 1 | populus_peu12364 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019779 |
| Zosteraceae | Zostera marina | 6 | Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... |