Basic Information
Locus ID:
Thhalv10005823m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 1343952 | 1345940 | - | Thhalv10005823m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 74,814.54 Da | 40.69 | 88.76 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 344 | 615 | 5.24998E-89 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 29 | 248 | 2.29526E-81 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 338 | 550 | 1.0E-49 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 38 | 251 | 7.1E-55 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 319 | 624 | 9.17E-78 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 23 | 273 | 4.2E-61 | IPR013320 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 323 | 414 | 3.6E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 415 | 631 | 1.8E-56 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 19 | 259 | 5.5E-53 | - |
| SMART | SM00220 | serkin_6 | 338 | 594 | 9.5E-40 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 338 | 600 | 40.018314 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 344 | 367 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 463 | 475 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59700.1 | lectin-receptor kinase. member of Receptor kinase-like protein family | 0 |
| RefSeq | XP_006402663.1 | L-type lectin-domain containing receptor kinase V.5 [Eutrema salsugineum] | 0 |
| Q96285 | L-type lectin-domain containing receptor kinase V.5 OS=Arabidopsis thaliana OX=3702 GN=LECRK55 PE=1 SV=1 | 0 | |
| TrEMBL | V4NDM8 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005823mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G59700.1, AT3G59730.1, AT3G59740.1, AT3G59750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005823m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g03460.v2.2, Sp5g03480.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064220.2N, BniB06g053940.2N, BniB06g062990.2N ... |