Basic Information
Locus ID:
Thhalv10005797m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 2761918 | 2764318 | + | Thhalv10005797m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 84,141.61 Da | 41.32 | 83.53 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 472 | 678 | 3.6E-38 | IPR000719 |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 200 | 228 | 1.3E-7 | - |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 40 | 266 | 1.66E-22 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 449 | 752 | 4.99E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 432 | 551 | 3.0E-34 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 146 | 348 | 2.8E-24 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 552 | 763 | 2.5E-39 | - |
| SMART | SM00220 | serkin_6 | 471 | 756 | 2.3E-20 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 471 | 756 | 31.354172 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 477 | 499 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 602 | 614 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 453 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55950.1 | CRINKLY4 related 3. | 0 |
| RefSeq | XP_024012955.1 | LOW QUALITY PROTEIN: putative serine/threonine-protein kinase-like protein CCR3 [Eutrema salsugineum] | 0 |
| Q9LY50 | Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana OX=3702 GN=CCR3 PE=2 SV=1 | 0 | |
| TrEMBL | V4NEL5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005797mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology