Basic Information
Locus ID:
Thhalv10005780m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
CR4
Description:
Tumor necrosis factor receptor / nerve growth factor receptor repeats.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 1421738 | 1425153 | + | Thhalv10005780m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 97,851.40 Da | 55.58 | 81.50 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 517 | 786 | 2.5028E-91 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 168 | 198 | 8.4E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 511 | 780 | 1.0E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 492 | 784 | 1.89E-73 | IPR011009 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 27 | 286 | 4.45E-26 | IPR009091 |
| Gene3D | G3DSA:2.130.10.30 | - | 25 | 161 | 3.4E-8 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 483 | 588 | 4.1E-31 | - |
| Gene3D | G3DSA:2.130.10.30 | - | 162 | 334 | 3.8E-16 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 589 | 798 | 3.3E-55 | - |
| SMART | SM00220 | serkin_6 | 511 | 788 | 2.4E-29 | IPR000719 |
| ProSiteProfiles | PS50050 | TNFR/NGFR family cysteine-rich region domain profile. | 345 | 394 | 10.322201 | IPR001368 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 511 | 788 | 36.272804 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 636 | 648 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 517 | 540 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 843 | 895 | - | - |
| Coils | Coil | Coil | 859 | 879 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59420.1 | crinkly4. Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes. | 0 |
| RefSeq | XP_006402689.1 | serine/threonine-protein kinase-like protein ACR4 [Eutrema salsugineum] | 0 |
| Q9LX29 | Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana OX=3702 GN=ACR4 PE=1 SV=1 | 0 | |
| TrEMBL | V4LNU6 | Serine/threonine-protein kinase-like protein ACR4 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005780mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26150, jg28861, jg903, jg904 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15852 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019390 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15226, Sbi_jg56038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26521 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006321 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01744, Sgl06903 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013488, gene:ENSEOMG00000030207 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009890, CQ.Regalona.r1.3BG0010050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30244150 |
| Apiaceae | Apium graveolens | 1 | Ag8G01197 |
| Arecaceae | Cocos nucifera | 1 | scaffold012795G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714553 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3403.V1.1, AsparagusV1_09.469.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G29151 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G59420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005780m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g03720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1449 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1542 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4252 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.188 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001627, Pov_00007373 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021180, gene-QOZ80_1BG0070740 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0429770.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032608, gene-QYE76_048285 |
| Poaceae | Oryza coarctata | 2 | Oco05G018660, Oco06G019430 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g43670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G175700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G017540, Chr03G009120, Chr05G016490, Chr08G009440 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G529200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042080, gene_TRIDC7BG033180 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G301300.1.cds1, TraesCS7B02G201600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb406780_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21466 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10446 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1261 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1085 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15572 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9189 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-939 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.259 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007131 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22250 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4162 |
| Salicaceae | Populus euphratica | 2 | populus_peu22603, populus_peu24029 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643709 |
| Solanaceae | Solanum chilense | 1 | SOLCI006417900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004998 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11919 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2046 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08820.v3.1 |