Basic Information
Locus ID:
Thhalv10005742m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_19 | 1183187 | 1189075 | + | Thhalv10005742m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 168,234.16 Da | 42.71 | 104.23 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1253 | 1473 | 1.37195E-125 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 936 | 1230 | 9.97211E-91 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 630 | 830 | 8.95588E-111 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 315 | 603 | 7.0586E-99 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 648 | 782 | 6.2E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 947 | 1182 | 1.4E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1272 | 1420 | 5.3E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 581 | 2.8E-28 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1245 | 1485 | 1.98E-68 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 846 | 3.24E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 302 | 603 | 1.14E-36 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 936 | 1241 | 8.5E-49 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 626 | 856 | 8.7E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 614 | 3.4E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1238 | 1491 | 1.6E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 897 | 1236 | 6.8E-56 | IPR036640 |
| SMART | SM00382 | AAA_5 | 657 | 830 | 1.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1281 | 1466 | 6.3E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 314 | 595 | 35.61132 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 630 | 853 | 23.38279 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 938 | 1202 | 32.839081 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1257 | 1489 | 17.393759 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 755 | 769 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_006402616.1 | putative ABC transporter C family member 15 isoform X1 [Eutrema salsugineum] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | V4LK36 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005742mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology