Basic Information
Locus ID:
Thhalv10005670m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 4292876 | 4293544 | + | Thhalv10005670m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 25,210.64 Da | 42.13 | 93.38 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 167 | 209 | 1.96365E-7 | - |
| Pfam | PF13639 | Ring finger domain | 167 | 208 | 5.7E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 214 | 1.18E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 213 | 1.6E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 167 | 209 | 9.922256 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77830.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024006686.1 | E3 ubiquitin-protein ligase RNF181 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KQK4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005670mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77830.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005670m.g.v1.0, Thhalv10019846m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g20460.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g074000.2N |