halophFGD

Basic Information

Locus ID: Thhalv10005666m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box associated domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_6	1964984	1966276	-	Thhalv10005666m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.46	48,058.59 Da	55.02	92.09	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	243	363	8.0E-23	IPR013187
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	137	379	1.5E-44	IPR017451

Best hit

Source	Best Hit ID	Description
TAIR	AT5G62510.1	F-box family protein.
RefSeq	XP_006394363.2	putative F-box protein At5g62660 [Eutrema salsugineum]
Swiss-Prot	Q9FJJ4	F-box protein At5g62510 OS=Arabidopsis thaliana OX=3702 GN=At5g62510 PE=2 SV=1
TrEMBL	V4KNY1	FBA_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005666mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	11	AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... AT3G52320.1, AT3G52330.1, AT3G52510.1, AT4G19930.1, AT4G19940.1, AT5G62510.1, AT5G62660.1
Brassicaceae	Eutrema salsugineum	16	Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... Thhalv10005397m.g.v1.0, Thhalv10005666m.g.v1.0, Thhalv10008003m.g.v1.0, Thhalv10009896m.g.v1.0, Thhalv10011525m.g.v1.0, Thhalv10012025m.g.v1.0, Thhalv10016561m.g.v1.0, Thhalv10019615m.g.v1.0, Thhalv10019649m.g.v1.0, Thhalv10023110m.g.v1.0, Thhalv10025237m.g.v1.0, Thhalv10028181m.g.v1.0, Thhalv10029357m.g.v1.0, Thhalv10029429m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2
Brassicaceae	Brassica nigra	35	BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... BniB02g071200.2N, BniB02g071210.2N, BniB02g088710.2N, BniB03g004100.2N, BniB03g004340.2N, BniB03g022920.2N, BniB03g022950.2N, BniB03g051110.2N, BniB03g051150.2N, BniB04g005130.2N, BniB04g046980.2N, BniB04p000224.2N, BniB05g010060.2N, BniB07g000640.2N, BniB07g043030.2N, BniB07g054790.2N, BniB07g061700.2N, BniB08g002270.2N, BniB08g026550.2N, BniB08g026610.2N, BniB08g026650.2N, BniB08g026660.2N, BniB08g026700.2N, BniB08g026730.2N, BniB08g066390.2N, BniB08g066550.2N, BniB08g066650.2N, BniB08g066670.2N, BniB08g066690.2N, BniB08g071850.2N, BniB08g072900.2N, BniB08g072960.2N