Basic Information
Locus ID:
Thhalv10005608m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 1745548 | 1747942 | + | Thhalv10005608m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 52,415.93 Da | 44.43 | 71.13 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 24 | 330 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 38 | 328 | 8.6E-75 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 19 | 382 | 3.93E-113 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 11 | 396 | 7.3E-124 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 464 | 1.3E-184 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 180 | 195 | 2.7E-14 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 40 | 57 | 1.1E-51 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 149 | 172 | 2.7E-14 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 73 | 91 | 1.1E-51 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 106 | 123 | 1.1E-51 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 265 | 275 | 2.7E-14 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 243 | 261 | 1.1E-51 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 127 | 147 | 1.1E-51 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 226 | 239 | 1.1E-51 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 470 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_024007071.1 | LOW QUALITY PROTEIN: histone deacetylase 6 [Eutrema salsugineum] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | V4KK82 | Histone deacetylase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005608mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology