halophFGD

Basic Information

Locus ID: Thhalv10005536m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: cysteine-rich repeat secretory protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_6	3180274	3181503	-	Thhalv10005536m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.19	47,703.65 Da	41.61	84.28	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03478	Protein of unknown function (DUF295)	329	385	4.1E-12	IPR005174
Pfam	PF00646	F-box domain	9	45	4.4E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	104	1.19E-5	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	9	48	7.1E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G27540.2	Protein of unknown function (DUF295).
RefSeq	XP_006394690.1	F-box protein At5g25290 [Eutrema salsugineum]
Swiss-Prot	Q4PSE7	F-box protein At5g25290 OS=Arabidopsis thaliana OX=3702 GN=At5g25290 PE=2 SV=1
TrEMBL	V4MKP2	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005536mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	36	AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... AT1G67160.1, AT1G69090.1, AT2G03560.1, AT2G03580.1, AT2G03610.1, AT2G04810.1, AT2G04830.1, AT2G04840.1, AT2G05970.1, AT2G14290.1, AT2G14500.1, AT2G24080.1, AT2G33190.1, AT2G33200.1, AT3G03726.1, AT3G03730.1, AT3G22345.1, AT4G10820.1, AT4G12810.1, AT4G12820.1, AT4G14165.1, AT4G17565.1, AT4G22060.1, AT4G22165.1, AT4G22170.1, AT4G22180.1, AT4G22660.1, AT5G14160.1, AT5G25290.1, AT5G25300.1, AT5G38270.1, AT5G66830.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... Thhalv10003406m.g.v1.0, Thhalv10005536m.g.v1.0, Thhalv10005623m.g.v1.0, Thhalv10005703m.g.v1.0, Thhalv10009751m.g.v1.0, Thhalv10009801m.g.v1.0, Thhalv10010442m.g.v1.0, Thhalv10013780m.g.v1.0, Thhalv10013894m.g.v1.0, Thhalv10015550m.g.v1.0, Thhalv10015724m.g.v1.0, Thhalv10017543m.g.v1.0, Thhalv10017659m.g.v1.0, Thhalv10017793m.g.v1.0, Thhalv10022303m.g.v1.0, Thhalv10025429m.g.v1.0, Thhalv10025466m.g.v1.0, Thhalv10026778m.g.v1.0, Thhalv10027445m.g.v1.0, Thhalv10027492m.g.v1.0, Thhalv10028086m.g.v1.0, Thhalv10028141m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... Sp4g15490.v2.2
Brassicaceae	Brassica nigra	32	BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... BniB02g015870.2N, BniB02g079660.2N, BniB02g079670.2N, BniB02g079680.2N, BniB02g079710.2N, BniB04g003420.2N, BniB04g003440.2N, BniB04g020100.2N, BniB04g022220.2N, BniB05g014900.2N, BniB05g014910.2N, BniB05g014920.2N, BniB05g014930.2N, BniB05g018820.2N, BniB05g037380.2N, BniB05g045930.2N, BniB05g075540.2N, BniB06g013440.2N, BniB06g022380.2N, BniB06g022390.2N, BniB06g022410.2N, BniB07g060540.2N, BniB08g005890.2N, BniB08g010430.2N, BniB08g013090.2N, BniB08g013100.2N, BniB08g021060.2N, BniB08g034830.2N, BniB08g034840.2N