Basic Information
Locus ID:
Thhalv10005530m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 4891346 | 4891832 | + | Thhalv10005530m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 11,590.93 Da | 33.75 | 64.90 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 24 | 95 | 1.0E-11 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 16 | 100 | 5.37E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 100 | 1.9E-25 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 100 | 11.507508 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48700.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_006395145.1 | putative small ubiquitin-related modifier 6 [Eutrema salsugineum] | 0 |
| Q9FKC6 | Putative small ubiquitin-related modifier 6 OS=Arabidopsis thaliana OX=3702 GN=SUMO6 PE=1 SV=1 | 0 | |
| TrEMBL | V4MLT5 | Ubiquitin-like domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005530mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology