Basic Information
Locus ID:
Thhalv10005473m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 424894 | 426110 | - | Thhalv10005473m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.29 | 22,833.18 Da | 52.93 | 69.75 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 151 | 193 | 4.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 195 | 8.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 196 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 152 | 192 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 193 | 12.076194 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024006785.1 | E3 ubiquitin-protein ligase MBR2 [Eutrema salsugineum] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MIM2 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005473mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005473m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04390.v2.2, SpUn0426_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014870.2N |