Basic Information
Locus ID:
Thhalv10005447m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 374877 | 375873 | - | Thhalv10005447m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 33,312.41 Da | 46.34 | 95.80 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 147 | 239 | 3.0E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 4 | 38 | 3.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 42 | 2.49E-8 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 117 | 272 | 3.66E-7 | IPR011043 |
| SMART | SM00256 | fbox_2 | 1 | 41 | 2.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 260 | 8.5E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 41 | 8.755626 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17780.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009103091.1 | F-box/kelch-repeat protein At2g43270 isoform X2 [Brassica rapa] | 0 |
| Q3E9Z8 | Putative F-box protein At4g17780 OS=Arabidopsis thaliana OX=3702 GN=At4g17780 PE=4 SV=2 | 0 | |
| TrEMBL | V4MIK8 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005447mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |