halophFGD

Basic Information

Locus ID: Thhalv10005411m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_6	5951105	5953027	+	Thhalv10005411m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.95	71,442.57 Da	42.52	66.42	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	44	92	8.8E-8	IPR004146
Pfam	PF03107	C1 domain	221	263	3.8E-10	IPR004146
Pfam	PF03107	C1 domain	106	148	1.9E-6	IPR004146
Pfam	PF03107	C1 domain	527	578	2.1E-9	IPR004146
Pfam	PF03107	C1 domain	273	320	1.6E-6	IPR004146
Pfam	PF03107	C1 domain	469	515	4.9E-8	IPR004146
Pfam	PF03107	C1 domain	356	404	8.4E-11	IPR004146
Pfam	PF03107	C1 domain	160	207	3.9E-8	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	24	93	4.84E-13	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	154	211	3.45E-9	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	213	276	2.69E-16	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	298	414	7.32E-20	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	105	150	1.03E-7	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	386	472	4.71E-12	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	492	583	2.51E-20	-
Gene3D	G3DSA:3.30.60.20	-	371	406	2.6E-5	-
SMART	SM00249	PHD_3	15	84	11.0	IPR001965
SMART	SM00249	PHD_3	376	413	6.3	IPR001965
SMART	SM00109	c1_12	109	160	0.23	IPR002219
SMART	SM00249	PHD_3	236	295	4.4	IPR001965
SMART	SM00109	c1_12	1	46	1.9	IPR002219
SMART	SM00109	c1_12	355	409	0.27	IPR002219
SMART	SM00249	PHD_3	549	612	9.4	IPR001965
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	2	41	7.9808	IPR002219
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	108	160	8.4755	IPR002219

Gene Ontology

Biological Process:

GO:0035556 (intracellular signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G27473.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_006395426.2	uncharacterized protein LOC18011845 isoform X1 [Eutrema salsugineum]
TrEMBL	V4KN57	Phorbol-ester/DAG-type domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005411mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg35663, jg8188, jg8412, jg8450, jg8451, jg8457
Apiaceae	Apium graveolens	5	Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874
Asteraceae	Flaveria trinervia	12	Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... Ftri1G15699, Ftri1G31999, Ftri3G08687, Ftri3G10138, Ftri6G30596, Ftri8G05177, Ftri8G13431, Ftri8G27137
Brassicaceae	Arabidopsis thaliana	35	AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... AT2G43220.1, AT3G06990.1, AT3G07000.1, AT3G45840.1, AT3G46800.1, AT3G46810.1, AT3G48400.1, AT4G01350.1, AT4G01740.1, AT4G01760.1, AT4G01910.1, AT4G01920.1, AT4G01925.1, AT4G01930.1, AT4G02180.1, AT4G02190.1, AT4G09690.1, AT4G11390.1, AT4G11540.1, AT4G11550.1, AT4G13992.1, AT4G16015.1, AT5G16430.1, AT5G22355.1, AT5G26190.1, AT5G37620.1, AT5G40320.1, AT5G45730.1, AT5G59920.1, AT5G59930.1, AT5G59940.1
Brassicaceae	Eutrema salsugineum	34	Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... Thhalv10002432m.g.v1.0, Thhalv10003740m.g.v1.0, Thhalv10003743m.g.v1.0, Thhalv10003754m.g.v1.0, Thhalv10003760m.g.v1.0, Thhalv10003761m.g.v1.0, Thhalv10005293m.g.v1.0, Thhalv10005296m.g.v1.0, Thhalv10005411m.g.v1.0, Thhalv10007210m.g.v1.0, Thhalv10009528m.g.v1.0, Thhalv10009889m.g.v1.0, Thhalv10012095m.g.v1.0, Thhalv10012175m.g.v1.0, Thhalv10012196m.g.v1.0, Thhalv10012912m.g.v1.0, Thhalv10012915m.g.v1.0, Thhalv10016311m.g.v1.0, Thhalv10022573m.g.v1.0, Thhalv10023179m.g.v1.0, Thhalv10024646m.g.v1.0, Thhalv10027008m.g.v1.0, Thhalv10027103m.g.v1.0, Thhalv10027671m.g.v1.0, Thhalv10028079m.g.v1.0, Thhalv10028133m.g.v1.0, Thhalv10028236m.g.v1.0, Thhalv10028242m.g.v1.0, Thhalv10028254m.g.v1.0, Thhalv10028534m.g.v1.0, Thhalv10029207m.g.v1.0, Thhalv10029489m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... Sp7g01410.v2.2, Sp7g16340.v2.2
Brassicaceae	Brassica nigra	39	BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... BniB01g026650.2N, BniB01g058940.2N, BniB01g058950.2N, BniB01g058960.2N, BniB01g058970.2N, BniB02g015730.2N, BniB02g039660.2N, BniB02g042710.2N, BniB02g050650.2N, BniB02g051320.2N, BniB02g067650.2N, BniB02g067710.2N, BniB03g040730.2N, BniB04g024850.2N, BniB04g024860.2N, BniB05g007940.2N, BniB05g017310.2N, BniB05g018620.2N, BniB05g020320.2N, BniB06g008470.2N, BniB06g023060.2N, BniB07g033480.2N, BniB07g033740.2N, BniB07g058140.2N, BniB07g060150.2N, BniB07g062010.2N, BniB07g062030.2N, BniB08g009490.2N, BniB08g012030.2N, BniB08g012050.2N, BniB08g022020.2N, BniB08g038300.2N, BniB08g044670.2N, BniB08g044680.2N, BniB08g044720.2N, BniB08g045080.2N
Casuarinaceae	Casuarina equisetifolia	17	Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... Ceq04G0075, Ceq04G0556, Ceq04G2464, Ceq04G2468, Ceq05G2487, Ceq05G2489, Ceq06G0228, Ceq07G2160, Ceq07G2257, Ceq08G0108, Ceq08G0138, Ceq09G0291
Casuarinaceae	Casuarina glauca	23	Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... Cgl04G0632, Cgl04G0634, Cgl04G0672, Cgl04G2695, Cgl05G2333, Cgl05G2698, Cgl07G1743, Cgl07G2340, Cgl07G2349, Cgl07G2372, Cgl07G2373, Cgl07G2522, Cgl08G0162, Cgl08G0163, Cgl08G0167, Cgl08G2652, Cgl09G0326, Cgl09G0327
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... nbisL1-mrna-8118, nbisL1-mrna-8119, nbisL1-mrna-8190
Plumbaginaceae	Limonium bicolor	1	Lb3G17998
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17876
Salicaceae	Populus euphratica	4	populus_peu26078, populus_peu26197, populus_peu26198 ... populus_peu26199