Basic Information
Locus ID:
Thhalv10005397m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6407926 | 6409114 | + | Thhalv10005397m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 40,576.89 Da | 51.57 | 93.20 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 186 | 307 | 1.4E-31 | IPR013187 |
| Pfam | PF00646 | F-box domain | 7 | 49 | 2.0E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 58 | 3.92E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 9.1E-7 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 8.1E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 88 | 325 | 1.0E-35 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 52 | 11.060639 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62510.1 | F-box family protein. | 0 |
| RefSeq | XP_010501225.1 | PREDICTED: F-box/LRR-repeat protein At2g40920-like [Camelina sativa] | 0 |
| Q9FJJ4 | F-box protein At5g62510 OS=Arabidopsis thaliana OX=3702 GN=At5g62510 PE=2 SV=1 | 0 | |
| TrEMBL | V4K5J1 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005397mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |