Basic Information
Locus ID:
Thhalv10005394m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 2861193 | 2866369 | - | Thhalv10005394m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 90,164.49 Da | 49.41 | 79.54 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 1 | 251 | 8.77476E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 203 | 7.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 34 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 119 | 1.4E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 665 | 821 | 1.3E-48 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 43 | 77 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 161 | 2.6E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 284 | 5.8E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 123 | 8.8E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 287 | 3.4E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 1.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 38 | 77 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 244 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 203 | 5.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 2.7E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 45 | 86 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2 | 34 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 17.526274 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2 | 44 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 87 | 121 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 45 | 79 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 87 | 128 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 171 | 212 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 171 | 206 | 12.393768 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 166 | 13.501034 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 190 | 204 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 148 | 162 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 106 | 120 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 190 | 204 | 3.0E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 825 | 19.449284 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 451 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006394609.2 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Eutrema salsugineum] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | V4K1V0 | Katanin_con80 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005394mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology