Basic Information
Locus ID:
Thhalv10005296m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 5936990 | 5938663 | + | Thhalv10005296m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 63,738.06 Da | 43.30 | 69.95 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 10 | 52 | 7.6E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 179 | 227 | 8.1E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 64 | 111 | 3.4E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 375 | 421 | 1.4E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 262 | 311 | 5.8E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 433 | 479 | 1.4E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 128 | 169 | 4.0E-10 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 36 | 116 | 2.75E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 293 | 378 | 1.2E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 204 | 322 | 3.66E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 126 | 182 | 9.87E-16 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 398 | 488 | 4.39E-21 | - |
| SMART | SM00249 | PHD_3 | 283 | 343 | 21.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 26 | 89 | 3.8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 394 | 455 | 4.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 142 | 201 | 20.0 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 12 | 64 | 9.464901 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27473.3 | - | 0 |
| RefSeq | XP_006395426.2 | uncharacterized protein LOC18011845 isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4KRS1 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005296mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |