Basic Information
Locus ID:
Thhalv10005258m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6146318 | 6148375 | - | Thhalv10005258m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 76,019.88 Da | 39.45 | 83.96 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 28 | 262 | 3.24827E-77 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 27 | 264 | 8.7E-53 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 362 | 636 | 6.2E-41 | IPR000719 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 27 | 262 | 3.03E-54 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 637 | 1.27E-66 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 335 | 439 | 4.4E-21 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 19 | 278 | 8.6E-58 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 440 | 643 | 1.1E-55 | - |
| SMART | SM00220 | serkin_6 | 361 | 639 | 4.9E-20 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 361 | 648 | 34.025497 | IPR000719 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 146 | 152 | - | IPR019825 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 491 | 503 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 367 | 389 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42120.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006395475.1 | L-type lectin-domain containing receptor kinase S.6 [Eutrema salsugineum] | 0 |
| Q9FHX3 | L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana OX=3702 GN=LECRKS6 PE=2 SV=1 | 0 | |
| TrEMBL | V4MMK6 | non-specific serine/threonine protein kinase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005258mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology