Basic Information
Locus ID:
Thhalv10004865m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 4105618 | 4108805 | - | Thhalv10004865m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.80 | 25,854.32 Da | 42.29 | 80.13 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 45 | 230 | 8.9E-93 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 63 | 182 | 2.75E-26 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 44 | 230 | 6.2E-97 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_024007586.1 | 60S ribosomal protein L18-3 [Eutrema salsugineum] | 0 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 0 | |
| TrEMBL | V4MLA8 | Ribosomal_L18e/L15P domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004865mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology