Basic Information
Locus ID:
Thhalv10004724m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Receptor homology region transmembrane domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 70463 | 72152 | + | Thhalv10004724m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 31,518.87 Da | 39.20 | 98.18 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 17 | 154 | 1.37941E-47 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 229 | 272 | 1.89067E-20 | - |
| Pfam | PF02225 | PA domain | 59 | 143 | 2.0E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 277 | 4.48E-20 | - |
| SUPERFAMILY | SSF52025 | PA domain | 80 | 146 | 2.62E-8 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 153 | 3.2E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 282 | 2.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 271 | 2.2E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 13.153163 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_006393803.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Eutrema salsugineum] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | V4KIT5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004724mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology