Basic Information
Locus ID:
Thhalv10004486m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin protein ligase RIE1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 7611594 | 7613199 | - | Thhalv10004486m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 39,405.93 Da | 48.16 | 98.40 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 303 | 345 | 8.64195E-19 | - |
| Pfam | PF13639 | Ring finger domain | 303 | 345 | 5.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 351 | 1.44E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 350 | 8.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 304 | 344 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 304 | 345 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01735.1 | RING-finger protein for embryogenesis. encodes a RING-H2 zinc finger protein essential for seed development. | 0 |
| RefSeq | XP_006395857.1 | E3 ubiquitin protein ligase RIE1 [Eutrema salsugineum] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | V4L0A7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004486mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology