Basic Information
Locus ID:
Thhalv10004293m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 5778697 | 5781671 | + | Thhalv10004293m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 46,843.89 Da | 42.22 | 82.36 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.40.160.10 | Porin | 152 | 361 | 2.8E-13 | IPR023614 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27930.1 | 0 | |
| RefSeq | XP_006395389.1 | uncharacterized protein LOC18011974 [Eutrema salsugineum] | 0 |
| TrEMBL | V4K564 | Omp85 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004293mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7707 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007363 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19132, Sbi_jg37551 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5393 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010070 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl21519, Sgl26835 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042016 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0016370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022340 |
| Apiaceae | Apium graveolens | 2 | Ag3G00854, Ag4G00807 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G005010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719432, gene-LOC120107118 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1113.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G21351, Ftri18G31361, Ftri1G18175, Ftri1G22577 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004293m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g068030.2N, BniB04g007070.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.370 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023305, Pov_00027870 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G29155, Lb7G33835, Lb7G33847 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1275, AH05.1276, BH05.1452, BH05.1453, CH05.1642 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0362070 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0091510.1, HORVU.MOREX.r3.1HG0091590.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015194 |
| Poaceae | Oryza coarctata | 3 | Oco09G017610, Oco10G017460, Oco10G017470 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g50200.2, LOC_Os05g50210.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G104200, gene-BS78_07G104300 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505532, Pt_Chr0505534 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G019420, Chr0G019440 |
| Poaceae | Thinopyrum elongatum | 9 | Tel1E01G690100, Tel1E01G690400, Tel1E01G690600 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG061260, gene_TRIDC1AG061270 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G416500.1, TraesCS1A02G416800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344500_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24770 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28866 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1183 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.161 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14976 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-643 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-134 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.110 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007449 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11863 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17439 |
| Salicaceae | Populus euphratica | 2 | populus_peu01007, populus_peu01046 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622734 |
| Solanaceae | Solanum chilense | 1 | SOLCI005981000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009112, gene-LOC114078070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14691 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2227 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03470.v3.1 |