Basic Information
Locus ID:
Thhalv10004072m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the alpha-IPM synthase homocitrate synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 2714934 | 2718184 | + | Thhalv10004072m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 54,193.59 Da | 39.49 | 91.55 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07940 | DRE_TIM_IPMS | 77 | 357 | 8.04836E-166 | - |
| Pfam | PF00682 | HMGL-like | 75 | 355 | 3.8E-93 | IPR000891 |
| SUPERFAMILY | SSF51569 | Aldolase | 72 | 373 | 2.01E-92 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 66 | 361 | 4.5E-98 | IPR013785 |
| Gene3D | G3DSA:1.10.238.260 | - | 363 | 478 | 2.6E-34 | - |
| ProSiteProfiles | PS50991 | Pyruvate carboxyltransferase domain. | 75 | 349 | 43.44381 | IPR000891 |
| ProSitePatterns | PS00815 | Alpha-isopropylmalate and homocitrate synthases signature 1. | 82 | 98 | - | IPR002034 |
| ProSitePatterns | PS00816 | Alpha-isopropylmalate and homocitrate synthases signature 2. | 279 | 292 | - | IPR002034 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23010.1 | methylthioalkylmalate synthase 1. Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. | 0 |
| RefSeq | XP_006394567.1 | methylthioalkylmalate synthase 1, chloroplastic [Eutrema salsugineum] | 0 |
| P0DO78 | Methylthioalkylmalate synthase 1-2, chloroplastic OS=Eutrema japonicum OX=75806 GN=MAM1-2 PE=1 SV=1 | 0 | |
| TrEMBL | V4KWV1 | Pyruvate carboxyltransferase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10004072mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10976, jg10977, jg5907 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15767, gene_19447 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019627, Ah019628 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g058810, BVRB_3g058820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38490, Sbi_jg6594 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15332 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006427, GOSA_00006428 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl01897, Sgl01898, Sgl07038, Sgl07039, Sgl44504, Sgl49273 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011743, gene:ENSEOMG00000030441 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0011030, CQ.Regalona.r1.3BG0011260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243490 |
| Apiaceae | Apium graveolens | 1 | Ag5G02859 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004560 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705082 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.1953.V1.1, AsparagusV1_04.1955.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G03059, Ftri12G07723 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G18500.1, AT1G74040.1, AT5G23010.1, AT5G23020.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10003976m.g.v1.0, Thhalv10004072m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g16450.v2.2, Sp2g24100.v2.2, Sp2g24110.v2.2 ... |
| Brassicaceae | Brassica nigra | 8 | BniB02g076300.2N, BniB02g076310.2N, BniB03g028050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2205, Ceq09G0942 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2325, Cgl09G1024 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02310 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0217s00013.v1.0, Dusal.0217s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g08470 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.2457, evm.TU.LG11.123, evm.TU.LG11.124 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023467, Pov_00026884 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33591 |
| Poaceae | Echinochloa crus-galli | 10 | AH02.813, AH04.240, AH05.159, BH02.108, BH02.135, BH04.237 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0380830, gene-QOZ80_5BG0427930 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0460900.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003279, gene-QYE76_003349, gene-QYE76_052410 |
| Poaceae | Oryza coarctata | 4 | Oco21G000770, Oco22G001620, Oco23G001530, Oco24G000960 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g04670.1, LOC_Os12g04440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G039500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500049, Pt_Chr0703001, Pt_Chr0703081 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G009170, Chr17G008190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G238500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG022230, gene_TRIDC5BG023720 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G131300.1, TraesCS5B02G133500.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb093160_P001, Zm00001eb196510_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27033, nbis-gene-51079 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18398 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.828, evm.TU.LG05.2106, evm.TU.LG06.1512 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1457 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1766 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1548 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2684 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.366 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001810 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12297 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12819 |
| Salicaceae | Populus euphratica | 1 | populus_peu13845 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609321, gene-LOC132643462 |
| Solanaceae | Solanum chilense | 3 | SOLCI004281200, SOLCI006467400, SOLCI006806900 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107023302, gene-LOC107026725, gene-LOC107026726 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14313_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1851 |
| Zosteraceae | Zostera marina | 2 | Zosma02g23460.v3.1, Zosma03g21940.v3.1 |