Basic Information
Locus ID:
Thhalv10003903m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
AFB2
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6271218 | 6274041 | - | Thhalv10003903m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 64,609.09 Da | 41.47 | 98.19 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 1.3E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.8E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 16 | 531 | 1.18E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.7E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 3.8E-177 | IPR032675 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 1.7E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 70.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 650.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_006395519.1 | protein AUXIN SIGNALING F-BOX 2 [Eutrema salsugineum] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | V4K5G7 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003903mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology