Basic Information
Locus ID:
Thhalv10003889m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 555529 | 557873 | - | Thhalv10003889m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 65,510.69 Da | 49.36 | 82.50 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 24 | 126 | 4.4229E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 29 | 119 | 2.7E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 201 | 455 | 1.4E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 4.71E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 122 | 3.1E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 201 | 479 | 84.941788 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 30 | 99 | 10.364727 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 587 | - | - |
| Coils | Coil | Coil | 298 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67440.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_006393947.1 | BTB/POZ domain-containing protein NPY3 [Eutrema salsugineum] | 0 |
| Q9FN09 | Phototropic-responsive NPH3 family protein NPY3 OS=Arabidopsis thaliana OX=3702 GN=NPY3 PE=2 SV=1 | 0 | |
| TrEMBL | V4KV42 | BTB/POZ domain-containing protein NPY4 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003889mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology