Basic Information
Locus ID:
Thhalv10003837m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Inactive leucine-rich repeat receptor-like serine threonine-protein kinase At5g24100
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 3074661 | 3076629 | + | Thhalv10003837m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 68,413.21 Da | 44.02 | 98.11 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 67 | 1.4E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 338 | 607 | 2.0E-30 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 192 | 211 | 0.63 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 145 | 167 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 338 | 610 | 9.69E-50 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 215 | 7.94E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 410 | 614 | 2.7E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 297 | 408 | 1.2E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 231 | 3.6E-48 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 334 | 615 | 28.937258 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 340 | 362 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24100.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006394667.1 | inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 [Eutrema salsugineum] | 0 |
| Q9FL63 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana OX=3702 GN=At5g24100 PE=1 SV=1 | 0 | |
| TrEMBL | V4KX42 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003837mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003837m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g040330.2N |