Basic Information
Locus ID:
Thhalv10003828m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
EBF2
Description:
EIN3-binding F box protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 3551416 | 3554413 | - | Thhalv10003828m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 66,057.66 Da | 48.92 | 102.21 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 324 | 344 | 0.39 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 189 | 213 | 0.22 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 216 | 239 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 242 | 263 | 0.21 | IPR001611 |
| Pfam | PF00646 | F-box domain | 55 | 94 | 5.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 92 | 6.15E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 151 | 392 | 5.89E-35 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 293 | 618 | 7.85E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 481 | 619 | 4.8E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 265 | 1.8E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 422 | 480 | 5.4E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 266 | 421 | 2.5E-20 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 0.0099 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 348 | 373 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 429 | 454 | 0.18 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 164 | 189 | 0.015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 482 | 507 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 216 | 241 | 0.083 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 242 | 267 | 0.072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 215 | 2.0E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 562 | 587 | 50.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 535 | 559 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 322 | 347 | 0.021 | IPR006553 |
| SMART | SM00256 | fbox_2 | 58 | 100 | 3.6E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 374 | 399 | 500.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 509 | 534 | 0.026 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_006394785.1 | EIN3-binding F-box protein 2 [Eutrema salsugineum] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | V4MKZ4 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003828mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology