Basic Information
Locus ID:
Thhalv10003811m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
NIK2
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6766858 | 6770221 | + | Thhalv10003811m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 71,360.27 Da | 40.58 | 95.94 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 139 | 198 | 4.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 50 | 87 | 9.0E-12 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 321 | 587 | 6.3E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 212 | 2.89E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 304 | 595 | 2.22E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 229 | 1.0E-54 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 289 | 396 | 1.2E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 397 | 609 | 6.6E-60 | - |
| SMART | SM00220 | serkin_6 | 320 | 575 | 5.4E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 320 | 595 | 35.311691 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 326 | 348 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 439 | 451 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 629 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25560.1 | NSP-interacting kinase 2. | 0 |
| RefSeq | XP_006395648.1 | protein NSP-INTERACTING KINASE 2 [Eutrema salsugineum] | 0 |
| Q8RY65 | Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana OX=3702 GN=NIK2 PE=1 SV=1 | 0 | |
| TrEMBL | V4KNP2 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003811mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology