halophFGD

Basic Information

Locus ID: Thhalv10003740m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_6	6009932	6012019	+	Thhalv10003740m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.21	79,251.25 Da	46.13	74.32	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	125	166	2.2E-6	IPR004146
Pfam	PF03107	C1 domain	9	50	2.1E-8	IPR004146
Pfam	PF03107	C1 domain	375	423	3.9E-9	IPR004146
Pfam	PF03107	C1 domain	291	339	2.6E-6	IPR004146
Pfam	PF03107	C1 domain	239	281	4.3E-9	IPR004146
Pfam	PF03107	C1 domain	63	111	9.8E-7	IPR004146
Pfam	PF03107	C1 domain	178	225	3.5E-8	IPR004146
Pfam	PF03107	C1 domain	548	595	1.7E-9	IPR004146
Pfam	PF03107	C1 domain	489	536	1.1E-8	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	513	602	9.77E-22	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	148	227	9.65E-15	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	33	112	1.44E-13	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	316	433	3.98E-18	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	233	294	2.99E-15	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	404	492	5.34E-9	-
Gene3D	G3DSA:3.30.60.20	-	15	55	5.3E-6	-
SMART	SM00109	c1_12	492	541	1.3	IPR002219
SMART	SM00109	c1_12	8	57	0.12	IPR002219
SMART	SM00109	c1_12	68	116	0.6	IPR002219
SMART	SM00109	c1_12	372	428	3.6	IPR002219
SMART	SM00249	PHD_3	254	313	7.8	IPR001965
SMART	SM00249	PHD_3	395	457	2.1	IPR001965
SMART	SM00109	c1_12	128	178	0.1	IPR002219
SMART	SM00249	PHD_3	509	571	2.7	IPR001965
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	11	57	8.4949	IPR002219
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	127	178	9.319401	IPR002219

Gene Ontology

Biological Process:

GO:0035556 (intracellular signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G42840.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_006395435.1	uncharacterized protein LOC18013067 [Eutrema salsugineum]
TrEMBL	V4MMH5	Cysteine/Histidine-rich C1 domain family protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003740mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg35663, jg8188, jg8412, jg8450, jg8451, jg8457
Apiaceae	Apium graveolens	5	Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874
Asteraceae	Flaveria trinervia	12	Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... Ftri1G15699, Ftri1G31999, Ftri3G08687, Ftri3G10138, Ftri6G30596, Ftri8G05177, Ftri8G13431, Ftri8G27137
Brassicaceae	Arabidopsis thaliana	35	AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... AT2G43220.1, AT3G06990.1, AT3G07000.1, AT3G45840.1, AT3G46800.1, AT3G46810.1, AT3G48400.1, AT4G01350.1, AT4G01740.1, AT4G01760.1, AT4G01910.1, AT4G01920.1, AT4G01925.1, AT4G01930.1, AT4G02180.1, AT4G02190.1, AT4G09690.1, AT4G11390.1, AT4G11540.1, AT4G11550.1, AT4G13992.1, AT4G16015.1, AT5G16430.1, AT5G22355.1, AT5G26190.1, AT5G37620.1, AT5G40320.1, AT5G45730.1, AT5G59920.1, AT5G59930.1, AT5G59940.1
Brassicaceae	Eutrema salsugineum	34	Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... Thhalv10002432m.g.v1.0, Thhalv10003740m.g.v1.0, Thhalv10003743m.g.v1.0, Thhalv10003754m.g.v1.0, Thhalv10003760m.g.v1.0, Thhalv10003761m.g.v1.0, Thhalv10005293m.g.v1.0, Thhalv10005296m.g.v1.0, Thhalv10005411m.g.v1.0, Thhalv10007210m.g.v1.0, Thhalv10009528m.g.v1.0, Thhalv10009889m.g.v1.0, Thhalv10012095m.g.v1.0, Thhalv10012175m.g.v1.0, Thhalv10012196m.g.v1.0, Thhalv10012912m.g.v1.0, Thhalv10012915m.g.v1.0, Thhalv10016311m.g.v1.0, Thhalv10022573m.g.v1.0, Thhalv10023179m.g.v1.0, Thhalv10024646m.g.v1.0, Thhalv10027008m.g.v1.0, Thhalv10027103m.g.v1.0, Thhalv10027671m.g.v1.0, Thhalv10028079m.g.v1.0, Thhalv10028133m.g.v1.0, Thhalv10028236m.g.v1.0, Thhalv10028242m.g.v1.0, Thhalv10028254m.g.v1.0, Thhalv10028534m.g.v1.0, Thhalv10029207m.g.v1.0, Thhalv10029489m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... Sp7g01410.v2.2, Sp7g16340.v2.2
Brassicaceae	Brassica nigra	39	BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... BniB01g026650.2N, BniB01g058940.2N, BniB01g058950.2N, BniB01g058960.2N, BniB01g058970.2N, BniB02g015730.2N, BniB02g039660.2N, BniB02g042710.2N, BniB02g050650.2N, BniB02g051320.2N, BniB02g067650.2N, BniB02g067710.2N, BniB03g040730.2N, BniB04g024850.2N, BniB04g024860.2N, BniB05g007940.2N, BniB05g017310.2N, BniB05g018620.2N, BniB05g020320.2N, BniB06g008470.2N, BniB06g023060.2N, BniB07g033480.2N, BniB07g033740.2N, BniB07g058140.2N, BniB07g060150.2N, BniB07g062010.2N, BniB07g062030.2N, BniB08g009490.2N, BniB08g012030.2N, BniB08g012050.2N, BniB08g022020.2N, BniB08g038300.2N, BniB08g044670.2N, BniB08g044680.2N, BniB08g044720.2N, BniB08g045080.2N
Casuarinaceae	Casuarina equisetifolia	17	Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... Ceq04G0075, Ceq04G0556, Ceq04G2464, Ceq04G2468, Ceq05G2487, Ceq05G2489, Ceq06G0228, Ceq07G2160, Ceq07G2257, Ceq08G0108, Ceq08G0138, Ceq09G0291
Casuarinaceae	Casuarina glauca	23	Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... Cgl04G0632, Cgl04G0634, Cgl04G0672, Cgl04G2695, Cgl05G2333, Cgl05G2698, Cgl07G1743, Cgl07G2340, Cgl07G2349, Cgl07G2372, Cgl07G2373, Cgl07G2522, Cgl08G0162, Cgl08G0163, Cgl08G0167, Cgl08G2652, Cgl09G0326, Cgl09G0327
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... nbisL1-mrna-8118, nbisL1-mrna-8119, nbisL1-mrna-8190
Plumbaginaceae	Limonium bicolor	1	Lb3G17998
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17876
Salicaceae	Populus euphratica	4	populus_peu26078, populus_peu26197, populus_peu26198 ... populus_peu26199