Basic Information
Locus ID:
Thhalv10003706m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 844876 | 848116 | - | Thhalv10003706m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 82,434.57 Da | 55.49 | 74.31 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 56 | 93 | 7.9E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 344 | 646 | 9.7E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 340 | 650 | 3.53E-79 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 54 | 94 | 2.27E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 42 | 96 | 7.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 337 | 663 | 7.9E-82 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 56 | 93 | 11.49032 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 344 | 649 | 47.170135 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 345 | 360 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 56 | 93 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 237 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_006394032.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | V4KVC0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003706mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology