Basic Information
Locus ID:
Thhalv10003629m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
UPF0392 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6067752 | 6071492 | + | Thhalv10003629m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 101,814.80 Da | 51.74 | 76.23 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00761 | Glyco_tranf_GTA_type | 282 | 368 | 5.48449E-4 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 711 | 749 | 1.5E-6 | IPR018957 |
| Pfam | PF01697 | Glycosyltransferase family 92 | 276 | 491 | 8.9E-42 | IPR008166 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 281 | 374 | 2.53E-6 | IPR029044 |
| SUPERFAMILY | SSF57850 | RING/U-box | 703 | 774 | 3.31E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 657 | 780 | 7.6E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 711 | 749 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 711 | 750 | 12.223724 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 726 | 735 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 636 | - | - |
| Coils | Coil | Coil | 646 | 678 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27330.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_024006691.1 | LOW QUALITY PROTEIN: glycosyltransferase family 92 protein RCOM_0530710 [Eutrema salsugineum] | 0 |
| B9SLR1 | Glycosyltransferase family 92 protein RCOM_0530710 OS=Ricinus communis OX=3988 GN=RCOM_0530710 PE=3 SV=1 | 0 | |
| TrEMBL | V4KRU7 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003629mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology