Basic Information
Locus ID:
Thhalv10003606m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 7571198 | 7574606 | + | Thhalv10003606m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 102,397.74 Da | 31.21 | 90.97 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 594 | 871 | 3.22138E-93 | - |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 392 | 429 | 2.9E-7 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 62 | 0.009 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 331 | 365 | 2.6E-4 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 589 | 866 | 4.5E-49 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 333 | 436 | 2.3E-17 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 304 | 4.93E-45 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 576 | 891 | 1.62E-80 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 329 | 453 | 1.7E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 666 | 886 | 1.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 551 | 665 | 1.6E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 326 | 6.3E-83 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 0.0027 | IPR003591 |
| SMART | SM00220 | serkin_6 | 588 | 873 | 9.6E-46 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 283 | 306 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 391 | 414 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 259 | 282 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 415 | 438 | 59.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 588 | 871 | 40.498871 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 713 | 725 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 594 | 616 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 948 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006395848.1 | receptor-like kinase TMK3 [Eutrema salsugineum] | 0 |
| Q9SIT1 | Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1 | 0 | |
| TrEMBL | V4KPC1 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003606mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology