Basic Information
Locus ID:
Thhalv10003577m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 6311316 | 6317792 | - | Thhalv10003577m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 115,356.19 Da | 39.94 | 81.78 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 317 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 898 | 1003 | 1.2E-12 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 4.1E-98 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 816 | 8.1E-49 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 450 | 2.0E-19 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 358 | 456 | 7.19E-26 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 1006 | 1.04E-142 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 356 | 2.95E-113 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1360 | - | 882 | 1011 | 1.9E-36 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.3E-31 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 457 | 5.6E-19 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 1.2E-123 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 864 | 5.3E-95 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 479 | 598 | 3.4E-28 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 1.1E-18 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_006395530.1 | alpha-mannosidase At3g26720 [Eutrema salsugineum] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | V4MMQ1 | Alpha-mannosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003577mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology