Basic Information
Locus ID:
Thhalv10003575m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 61677 | 67382 | - | Thhalv10003575m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 115,692.64 Da | 43.82 | 79.71 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 321 | 5.18337E-173 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 46 | 358 | 5.0E-93 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 602 | 815 | 6.0E-54 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 455 | 4.4E-19 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 897 | 1007 | 4.8E-11 | IPR041147 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 457 | 4.58E-26 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 34 | 359 | 8.45E-108 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 466 | 1010 | 2.98E-140 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 599 | 863 | 7.7E-95 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 469 | 580 | 1.7E-24 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1014 | 2.3E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 405 | 1.3E-29 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 45 | 325 | 3.0E-120 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 406 | 460 | 3.1E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 363 | 437 | 6.1E-22 | IPR015341 |
| Coils | Coil | Coil | 944 | 964 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_006393801.2 | probable alpha-mannosidase At5g66150 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | V4KME6 | Alpha-mannosidase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003575mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology