Basic Information
Locus ID:
Thhalv10003570m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 2446626 | 2449989 | + | Thhalv10003570m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 113,410.18 Da | 35.54 | 97.48 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 277 | 336 | 2.8E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 723 | 994 | 9.2E-48 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 253 | 275 | 0.11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 88 | 143 | 7.3E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 723 | 998 | 1.89E-72 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 88 | 391 | 7.3E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 316 | 628 | 1.11E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 702 | 801 | 1.4E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 319 | 3.7E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 320 | 640 | 6.7E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 200 | 5.8E-39 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 802 | 1016 | 7.6E-60 | - |
| SMART | SM00369 | LRR_typ_2 | 203 | 227 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 562 | 586 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 251 | 275 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 443 | 466 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 299 | 322 | 5.7 | IPR003591 |
| SMART | SM00220 | serkin_6 | 720 | 997 | 1.2E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 323 | 345 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 468 | 491 | 97.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 347 | 371 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 155 | 9.6 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 720 | 1002 | 38.336369 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 849 | 861 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 726 | 749 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61480.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006394500.1 | leucine-rich repeat receptor-like protein kinase TDR [Eutrema salsugineum] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | V4MK48 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003570mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology