Basic Information
Locus ID:
Thhalv10003550m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 4066245 | 4072912 | - | Thhalv10003550m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 125,307.51 Da | 37.60 | 84.07 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 510 | 0.0077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 959 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 476 | 964 | 4.16E-40 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 767 | 1104 | 1.26E-29 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 424 | 8.97E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 439 | 1.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 440 | 701 | 1.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 770 | 979 | 9.8E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 980 | 1115 | 4.1E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 602 | 642 | 0.97 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1051 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 920 | 959 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 877 | 917 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 510 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 553 | 0.016 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1060 | 1102 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 376 | 0.69 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.7E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 556 | 599 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 927 | 962 | 10.284687 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.839112 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 476 | 512 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 620 | 651 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.163201 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 927 | 968 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 497 | 511 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_024007661.1 | topless-related protein 3 isoform X1 [Eutrema salsugineum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | V4KLV7 | Topless-related protein 3-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003550mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology