Basic Information
Locus ID:
Thhalv10003533m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_6 | 7767938 | 7773940 | - | Thhalv10003533m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 138,220.34 Da | 53.09 | 69.23 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 711 | 756 | 1.03292E-16 | - |
| CDD | cd04301 | NAT_SF | 909 | 968 | 2.05883E-4 | - |
| Pfam | PF00628 | PHD-finger | 711 | 759 | 4.9E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 633 | 683 | 2.7E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 702 | 764 | 3.29E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 897 | 1016 | 1.67E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 703 | 814 | 2.0E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 879 | 1001 | 3.4E-5 | - |
| SMART | SM00249 | PHD_3 | 758 | 813 | 2.6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 710 | 757 | 2.5E-9 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 850 | 1016 | 10.22107 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 708 | 759 | 9.846001 | IPR019787 |
| PRINTS | PR00929 | AT-hook-like domain signature | 354 | 364 | 4.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 244 | 255 | 4.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 168 | 178 | 4.4E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1154 | 1168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1041 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1015 | 1067 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1032 | - | - |
| Coils | Coil | Coil | 1085 | 1105 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_024007124.1 | uncharacterized protein LOC18012680 isoform X1 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4MNK8 | PHD-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003533mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology