halophFGD

Basic Information

Locus ID: Thhalv10003422m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_17	143314	144559	+	Thhalv10003422m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.12	40,932.05 Da	40.25	93.29	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	177	293	3.6E-20	IPR013187
SUPERFAMILY	SSF81383	F-box domain	24	93	1.7E-8	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	92	311	3.0E-35	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G30790.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_010494598.1	PREDICTED: F-box protein At1g30790-like [Camelina sativa]
Swiss-Prot	Q9SY20	F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2
TrEMBL	V4LLI1	FBA_3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003422mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	2	Thhalv10001134m.g.v1.0, Thhalv10003422m.g.v1.0