Basic Information
Locus ID:
Thhalv10003406m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_17 | 2499180 | 2500364 | + | Thhalv10003406m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 45,177.19 Da | 40.39 | 86.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 44 | 2.7E-7 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 306 | 368 | 3.5E-9 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 44 | 2.88E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 47 | 2.0E-6 | - |
| SMART | SM00256 | fbox_2 | 12 | 52 | 0.0032 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25290.1 | F-box family protein with a domain of unknown function (DUF295). | 0 |
| RefSeq | XP_006403292.2 | F-box protein At5g25290 [Eutrema salsugineum] | 0 |
| Q4PSE7 | F-box protein At5g25290 OS=Arabidopsis thaliana OX=3702 GN=At5g25290 PE=2 SV=1 | 0 | |
| TrEMBL | V4L349 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003406mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |