Basic Information
Locus ID:
Thhalv10003179m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_17 | 458206 | 460677 | - | Thhalv10003179m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 59,873.57 Da | 33.82 | 90.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 513 | 1.18816E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 297 | 0.0086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 335 | 0.063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 513 | 6.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 9.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 471 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 210 | 513 | 1.17E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 514 | 8.1E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 345 | 385 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 6.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 514 | 6.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 3.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 471 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 425 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 343 | 0.08 | IPR001680 |
| SMART | SM00668 | ctlh | 49 | 107 | 3.7E-4 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 480 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 49 | 107 | 9.611531 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 513 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 513 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 16 | 48 | 8.842023 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 10.021053 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 458 | 472 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 458 | 472 | 5.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 5.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 239 | 253 | 5.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006403164.1 | WD repeat-containing protein WDS homolog [Eutrema salsugineum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | V4LQ73 | WD repeat-containing protein 26 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003179mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology