Basic Information
Locus ID:
Thhalv10003105m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 9131665 | 9132171 | - | Thhalv10003105m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 19,330.76 Da | 30.79 | 88.21 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 4 | 166 | 5.6E-31 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 166 | 1.19E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 168 | 2.5E-38 | - |
| SMART | SM00220 | serkin_6 | 1 | 166 | 3.1E-9 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 166 | 26.85956 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 18 | 30 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006418957.2 | mitogen-activated protein kinase kinase kinase 4 [Eutrema salsugineum] | 0 |
| O80888 | Mitogen-activated protein kinase kinase kinase 17 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK17 PE=1 SV=1 | 0 | |
| TrEMBL | V4LC84 | Protein kinase domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003105mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT2G18530.1, AT3G45670.1, AT3G45790.1, AT3G46140.1 ... |
| Brassicaceae | Eutrema salsugineum | 12 | Thhalv10002766m.g.v1.0, Thhalv10002826m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp5g15460.v2.2, Sp5g15480.v2.2, Sp5g15720.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB08g058970.2N, BniB08g059000.2N, BniB08g062340.2N ... |