halophFGD

Basic Information

Locus ID: Thhalv10003097m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_4	5112189	5113054	-	Thhalv10003097m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.40	21,857.66 Da	26.30	78.50	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	49	172	1.2E-18	IPR006527
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	14	71	4.0E-12	IPR017451

KEGG Pathway

KO Term:

K02535 (UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108])

Pathway:

ko00540 (Lipopolysaccharide biosynthesis) map00540 (Lipopolysaccharide biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00060 (KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type)

Reaction:

R04587 (UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine + H2O <=> UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine + Acetate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G59680.2	-
RefSeq	XP_024009293.1	F-box protein At1g59680 [Eutrema salsugineum]
Swiss-Prot	Q9LQ46	F-box protein At1g59680 OS=Arabidopsis thaliana OX=3702 GN=At1g59680 PE=4 SV=2
TrEMBL	V4KH07	FBA_1 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003097mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N