Basic Information
Locus ID:
Thhalv10003018m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 10450249 | 10450824 | + | Thhalv10003018m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 21,775.27 Da | 49.98 | 78.48 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 187 | 1.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 190 | 2.04E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 191 | 3.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 186 | 6.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 187 | 12.681067 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24480.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_006419063.1 | uncharacterized RING finger protein YBR062C [Eutrema salsugineum] | 0 |
| TrEMBL | V4L1K1 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003018mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT2G24285.1, AT2G24460.1, AT2G24480.1, AT2G25565.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000562m.g.v1.0, Thhalv10003018m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g03480.v2.2, Sp4g04960.v2.2, SpUn0364_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g017830.2N, BniB01g019000.2N, BniB01g019130.2N ... |