Basic Information
Locus ID:
Thhalv10002977m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RNA polymerase II transcription regulator recruiting activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 5142773 | 5143862 | - | Thhalv10002977m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 41,611.55 Da | 50.87 | 86.37 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 199 | 351 | 5.7E-41 | IPR006527 |
| Pfam | PF00646 | F-box domain | 4 | 45 | 1.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 133 | 1.83E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 1.8E-8 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 7.1E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 327 | 1.9E-39 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 51 | 11.617022 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47300.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024009294.1 | probable F-box protein At5g47300 [Eutrema salsugineum] | 0 |
| Q9LVS9 | Probable F-box protein At5g47300 OS=Arabidopsis thaliana OX=3702 GN=At5g47300 PE=4 SV=1 | 0 | |
| TrEMBL | V4LBG3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002977mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |