Basic Information
Locus ID:
Thhalv10002898m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Weak chloroplast movement under blue light
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 3863789 | 3865353 | + | Thhalv10002898m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 32,719.88 Da | 40.56 | 91.57 | -0.12 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17310.1 | F-box and associated interaction domains-containing protein. Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance | 0 |
| RefSeq | XP_024009274.1 | LOW QUALITY PROTEIN: putative F-box protein At3g16590 [Eutrema salsugineum] | 0 |
| Q8LL17 | Protein SUPPRESSOR OF NIM1 1 OS=Arabidopsis thaliana OX=3702 GN=SON1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L070 | FBA_1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002898mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |