Basic Information
Locus ID:
Thhalv10002840m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 10934984 | 10936419 | - | Thhalv10002840m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 46,078.19 Da | 41.44 | 79.69 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 124 | 389 | 8.70123E-47 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 142 | 199 | 8.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 389 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 258 | 2.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 304 | 6.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 112 | 392 | 3.97E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 52 | 392 | 3.1E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 178 | 213 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 304 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 347 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 175 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 131 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 1.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 5.0E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 357 | 390 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 357 | 390 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 258 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 184 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 258 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 313 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 376 | 390 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006419087.2 | cell division cycle 20.1, cofactor of APC complex isoform X1 [Eutrema salsugineum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LCP8 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002840mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology