halophFGD

Basic Information

Locus ID: Thhalv10002786m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: ABC transporter E family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_4	5108817	5109902	-	Thhalv10002786m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.23	41,567.30 Da	28.98	88.48	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	182	349	2.1E-45	IPR006527
Pfam	PF00646	F-box domain	3	41	9.7E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	1	122	2.49E-12	IPR036047
SMART	SM00256	fbox_2	7	47	0.003	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	92	298	1.6E-37	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06174 (ATP-binding cassette, sub-family E, member 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49510.1	F-box family protein.
RefSeq	XP_024009293.1	F-box protein At1g59680 [Eutrema salsugineum]
Swiss-Prot	Q9LQ46	F-box protein At1g59680 OS=Arabidopsis thaliana OX=3702 GN=At1g59680 PE=4 SV=2
TrEMBL	V4L0G1	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002786mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N