Basic Information
Locus ID:
Thhalv10002566m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 8070522 | 8071974 | + | Thhalv10002566m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 41,776.22 Da | 73.63 | 65.26 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 201 | 245 | 8.27608E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 55 | 1.0E-15 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 200 | 242 | 5.2E-11 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 260 | 382 | 2.4E-38 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 248 | 1.72E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 248 | 2.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 241 | 4.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 242 | 12.164712 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006418878.1 | E3 ubiquitin-protein ligase RDUF1 [Eutrema salsugineum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L102 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002566mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology