Basic Information
Locus ID:
Thhalv10002533m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 5293528 | 5294927 | - | Thhalv10002533m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 49,410.09 Da | 48.35 | 78.24 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 68 | 105 | 3.4E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 264 | 382 | 2.4E-30 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 114 | 3.79E-12 | IPR036047 |
| SMART | SM00256 | fbox_2 | 68 | 108 | 7.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 172 | 395 | 5.2E-40 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 62 | 108 | 9.92138 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006418682.2 | F-box protein At1g30790 [Eutrema salsugineum] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | V4LBI0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002533mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |