Basic Information
Locus ID:
Thhalv10002430m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 8150792 | 8154015 | + | Thhalv10002430m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 71,641.91 Da | 34.32 | 97.59 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 1.06358E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 548 | 587 | 3.7E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 383 | 422 | 1.7E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 326 | 1.7E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 466 | 504 | 8.4E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 250 | 333 | 1.26E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 637 | 1.46E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 338 | 492 | 1.5E-36 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 505 | 651 | 1.1E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 329 | 1.9E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 116 | 2.0E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 506 | 546 | 9.7 | IPR000225 |
| SMART | SM00185 | arm_5 | 424 | 464 | 0.064 | IPR000225 |
| SMART | SM00185 | arm_5 | 383 | 423 | 3.0E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 547 | 587 | 17.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 3.3E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 465 | 505 | 0.8 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 517 | 559 | 9.1524 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 394 | 436 | 13.4574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 45.141373 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 661 | - | - |
| Coils | Coil | Coil | 617 | 644 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_006418891.1 | U-box domain-containing protein 13 [Eutrema salsugineum] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | V4L4V7 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002430mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology