Basic Information
Locus ID:
Thhalv10002394m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 7712004 | 7715225 | - | Thhalv10002394m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 100,175.28 Da | 41.67 | 86.42 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 585 | 858 | 4.27944E-92 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 582 | 853 | 3.0E-47 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 85 | 141 | 8.9E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 323 | 358 | 0.79 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 57 | 3.4E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 315 | 9.18E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 323 | 429 | 1.89E-16 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 555 | 861 | 1.09E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 657 | 881 | 6.7E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 443 | 1.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 319 | 4.0E-68 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 544 | 656 | 3.8E-34 | - |
| SMART | SM00369 | LRR_typ_2 | 106 | 129 | 5.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 204 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 157 | 179 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 385 | 409 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 130 | 151 | 240.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 579 | 859 | 1.3E-42 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 579 | 859 | 40.866352 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 585 | 607 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 704 | 716 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 931 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006418841.1 | receptor-like kinase TMK4 [Eutrema salsugineum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | V4L4R0 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002394mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology